…missions-files

Feature: add option force re-archiving  to archive_old_submissions script

…n' into feature/new-agent-model-migration

…migration

Feature: Add new AgroPortal model migration script

Conflicts:
	Gemfile.lock

…bmission files (#16)

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* update Gemfile to set gem branch's development

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* add option force re-archiving  to archive_old_submissions script

* add request_store gem

* remove the ontology deletion in the test_parse_submissions to re-use it

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* add agroportal new model migration script

* [ontoportal-bot] Gemfile.lock update

* fix the attribute of type String migration  to URI didn't want to update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* update AgroPortal migration script  to handle values xsd:DataType

---------

Co-authored-by: OntoPortal Bot <[email protected]>

…its, and the Most visited pages in the month (#17)

* remove forgot variables

* fix for #61

- create contact instance if it doesn't exist
- changed --from-api to --from-apikey
- minor linting

* Restore branch specifier to develop

* Optimization - remove repeated query

* Gemfile.lock update

* Gemfile.lock update

* Gemfile.lock update

* Gemfile had references to develop branch

* implemented #64 - ability to generate labels independently of RDF processing (and vise versa)

* Gemfile.lock update

* fixed a bug in #64

* Relocate docker-compose file and update default configs

* Add GH workflow for publishing docker images

* use ruby native method for listing files instead of a git function

Resolves warning messages when we exclude .git directory from docker image

* remove comment

* capitalize argument in order to be consistent with other scripts

* add arm/64 platform

* additional error handling for SPAM deletion script, #60

* additional error handling for SPAM deletion script, #60

* implemented #67 - improved corrupt data and error handling

* Gemfile.lock update

* exclude test/data/dictionary.txt from git commits

* update version of solr-ut

* Gemfile.lock update

* Restore branch specifier to master

* fixed configuration for the analytics module

* Gemfile.lock update

* implemented #69 - scheduled annotator dictionary file generation should be a configurable option instead of the default

* Gemfile.lock update

* gem update

* create new rake taks for updating purls for all ontologies

moved from ontologies_api/fix_purls.rb

* initial implementation of #70 - Google Analytics v4 Update Compatibility Issue

* added the /data folder to ignore

* update gems

* Gemfile.lock update

* Gemfile.lock update

* Gemfile.lock update

* use patched version of agraph v7.3.1

* unpin faraday gem

* A chnage to reference Analytics Redis from LinkedData block

* Gemfile.lock update

* Gemfile.lock update

* Gemfile.lock update

* Gemfile.lock update

* use assert_operator instead of assert

minitest style guide adherence.
encountered an intermittent unit test failure so assert_operator will provide
better failure feedback than assert

* use local solr to pass the tests

* fixed ncbo_ontology_archive_old_submissions error output

* Gemfile.lock update

* Gemfile.lock update

* Gemfile update

* Gemfile update

* fixes to the analytics script and a new script to generate UA analytics for documentation

* Gemfile.lock update

* Gemfile.lock update

* implemented the first pass at bmir-radx/radx-project#37

* implemented the first pass at bmir-radx/radx-project#37

* set bundler version to be comptatible with ruby 2.7

+ AG v8

* refactor ontologies analytics job to handle the new google analytics migration

* add user analytics fetching the monthly user visits count

* add page visits analytics  fetching  last month most visited pages

* extract google analytics UA import code to a script to make current code clean of it

* add option to force submission archiving even if already archived

---------

Co-authored-by: Alex Skrenchuk <[email protected]>
Co-authored-by: mdorf <[email protected]>
Co-authored-by: Jennifer Vendetti <[email protected]>

Merge to master: Release v2.2.1

…ssing queue (#22)

* fix the object analytics fetching after the new year change (#19)

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

* Feature: add index all data step to the processing queue (#21)

* update the docker-based running tests script

* add :index_all_data step the process actions

* update github action test CI to do it using all the backends

* [ontoportal-bot] Gemfile.lock update

* [ontoportal-bot] Gemfile.lock update

---------

Co-authored-by: OntoPortal Bot <[email protected]>